{
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"Package": "BIEN",
"Title": "Tools for Accessing the Botanical Information and Ecology\nNetwork Database",
"Version": "1.2.8",
"Authors@R": "person(\"Brian\", \"Maitner\", email = \"bmaitner@gmail.com\", role = c(\"aut\", \"cre\"))",
"Description": "Provides Tools for Accessing the Botanical Information and\nEcology Network Database. The BIEN database contains cleaned\nand standardized botanical data including occurrence, trait,\nplot and taxonomic data (See\n for more Information). This\npackage provides functions that query the BIEN database by\nconstructing and executing optimized SQL queries.",
"License": "MIT + file LICENSE",
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"Encoding": "UTF-8",
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"Date": "2026-10-09 08:53:53 UTC",
"User": "root"
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"Author": "Brian Maitner [aut, cre]",
"Maintainer": "Brian Maitner ",
"Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibssl-dev libproj-dev libsqlite3-dev libudunits2-dev",
"Repository": "https://bmaitner.r-universe.dev",
"Date/Publication": "2026-04-30 09:31:26 UTC",
"RemoteUrl": "https://github.com/cran/BIEN",
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"_published": "2026-10-09T08:58:14.674Z",
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"_exports": [
"BIEN_list_all",
"BIEN_list_country",
"BIEN_list_county",
"BIEN_list_sf",
"BIEN_list_state",
"BIEN_metadata_citation",
"BIEN_metadata_database_version",
"BIEN_metadata_list_political_names",
"BIEN_metadata_match_data",
"BIEN_occurrence_box",
"BIEN_occurrence_country",
"BIEN_occurrence_county",
"BIEN_occurrence_family",
"BIEN_occurrence_genus",
"BIEN_occurrence_records_per_species",
"BIEN_occurrence_sf",
"BIEN_occurrence_species",
"BIEN_occurrence_state",
"BIEN_phylogeny_complete",
"BIEN_phylogeny_conservative",
"BIEN_phylogeny_label_nodes",
"BIEN_plot_country",
"BIEN_plot_dataset",
"BIEN_plot_datasource",
"BIEN_plot_list_datasource",
"BIEN_plot_list_sampling_protocols",
"BIEN_plot_metadata",
"BIEN_plot_name",
"BIEN_plot_sampling_protocol",
"BIEN_plot_sf",
"BIEN_plot_state",
"BIEN_ranges_box",
"BIEN_ranges_genus",
"BIEN_ranges_intersect_species",
"BIEN_ranges_list",
"BIEN_ranges_load_species",
"BIEN_ranges_sf",
"BIEN_ranges_shapefile_to_skinny",
"BIEN_ranges_skinny_ranges_to_richness_raster",
"BIEN_ranges_species",
"BIEN_ranges_species_bulk",
"BIEN_stem_datasource",
"BIEN_stem_family",
"BIEN_stem_genus",
"BIEN_stem_sampling_protocol",
"BIEN_stem_species",
"BIEN_taxonomy_family",
"BIEN_taxonomy_genus",
"BIEN_taxonomy_species",
"BIEN_trait_country",
"BIEN_trait_family",
"BIEN_trait_genus",
"BIEN_trait_list",
"BIEN_trait_mean",
"BIEN_trait_species",
"BIEN_trait_trait",
"BIEN_trait_traitbyfamily",
"BIEN_trait_traitbygenus",
"BIEN_trait_traitbyspecies",
"BIEN_trait_traits_per_species"
],
"_help": [
{
"page": "BIEN",
"title": "BIEN: Tools for accessing the BIEN database.",
"topics": [
"BIEN-package",
"BIEN"
]
},
{
"page": "BIEN_list_all",
"title": "Extract a list of all species in the BIEN database.",
"concept": [
"list functions"
],
"topics": [
"BIEN_list_all"
]
},
{
"page": "BIEN_list_country",
"title": "Extract species list by country",
"concept": [
"list functions"
],
"topics": [
"BIEN_list_country"
]
},
{
"page": "BIEN_list_county",
"title": "Extract a species list by county.",
"concept": [
"list functions"
],
"topics": [
"BIEN_list_county"
]
},
{
"page": "BIEN_list_sf",
"title": "Extract a list of species within a given sf polygon.",
"concept": [
"list functions"
],
"topics": [
"BIEN_list_sf"
]
},
{
"page": "BIEN_list_state",
"title": "Extract a species list by state/province",
"concept": [
"list functions"
],
"topics": [
"BIEN_list_state"
]
},
{
"page": "BIEN_metadata_citation",
"title": "Generate citations for data extracted from BIEN.",
"concept": [
"metadata functions"
],
"topics": [
"BIEN_metadata_citation"
]
},
{
"page": "BIEN_metadata_database_version",
"title": "Download the current BIEN database version and release date",
"concept": [
"metadata functions"
],
"topics": [
"BIEN_metadata_database_version"
]
},
{
"page": "BIEN_metadata_list_political_names",
"title": "List political divisions and associated geonames codes.",
"concept": [
"metadata functions"
],
"topics": [
"BIEN_metadata_list_political_names"
]
},
{
"page": "BIEN_metadata_match_data",
"title": "Check for differing records between old and new dataframes.",
"concept": [
"metadata functions"
],
"topics": [
"BIEN_metadata_match_data"
]
},
{
"page": "BIEN_occurrence_box",
"title": "Extract species occurrence records by a latitude/longitude bounding box.",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_box"
]
},
{
"page": "BIEN_occurrence_country",
"title": "Extract species occurrence records by country.",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_country"
]
},
{
"page": "BIEN_occurrence_county",
"title": "Extract species occurrence records by county.",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_county"
]
},
{
"page": "BIEN_occurrence_family",
"title": "Extract species occurrences by family.",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_family"
]
},
{
"page": "BIEN_occurrence_genus",
"title": "Extract occurrence data from BIEN for specified genera",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_genus"
]
},
{
"page": "BIEN_occurrence_records_per_species",
"title": "Count the number of (geoValid) occurrence records for each species in BIEN",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_records_per_species"
]
},
{
"page": "BIEN_occurrence_sf",
"title": "Extract occurrence data for specified sf polygon",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_sf"
]
},
{
"page": "BIEN_occurrence_species",
"title": "Extract occurrence data for specified species from BIEN",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_species"
]
},
{
"page": "BIEN_occurrence_state",
"title": "Extract species occurrence records by state.",
"concept": [
"occurrence functions"
],
"topics": [
"BIEN_occurrence_state"
]
},
{
"page": "BIEN_phylogeny_complete",
"title": "Download the complete BIEN phylogenies",
"concept": [
"phylogeny functions"
],
"topics": [
"BIEN_phylogeny_complete"
]
},
{
"page": "BIEN_phylogeny_conservative",
"title": "Download the conservative BIEN phylogeny",
"concept": [
"phylogeny functions"
],
"topics": [
"BIEN_phylogeny_conservative"
]
},
{
"page": "BIEN_phylogeny_label_nodes",
"title": "Label nodes on a phylogeny",
"concept": [
"phylogeny functions"
],
"topics": [
"BIEN_phylogeny_label_nodes"
]
},
{
"page": "BIEN_plot_country",
"title": "Download plot data from specified countries.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_country"
]
},
{
"page": "BIEN_plot_dataset",
"title": "Download plot data by dataset.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_dataset"
]
},
{
"page": "BIEN_plot_datasource",
"title": "Download plot data from a given datasource.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_datasource"
]
},
{
"page": "BIEN_plot_list_datasource",
"title": "List available datasources.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_list_datasource"
]
},
{
"page": "BIEN_plot_list_sampling_protocols",
"title": "List available sampling protocols.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_list_sampling_protocols"
]
},
{
"page": "BIEN_plot_metadata",
"title": "Download plot metadata",
"concept": [
"metadata functions",
"plot functions"
],
"topics": [
"BIEN_plot_metadata"
]
},
{
"page": "BIEN_plot_name",
"title": "Download plot data by plot name.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_name"
]
},
{
"page": "BIEN_plot_sampling_protocol",
"title": "Download plot data using a specified sampling protocol.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_sampling_protocol"
]
},
{
"page": "BIEN_plot_sf",
"title": "Download plot data from specified sf object.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_sf"
]
},
{
"page": "BIEN_plot_state",
"title": "Download plot data from specified states/provinces.",
"concept": [
"plot functions"
],
"topics": [
"BIEN_plot_state"
]
},
{
"page": "BIEN_ranges_box",
"title": "Download range maps that intersect a specified bounding box.",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_box"
]
},
{
"page": "BIEN_ranges_genus",
"title": "Download range maps for given genus.",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_genus"
]
},
{
"page": "BIEN_ranges_intersect_species",
"title": "Download range maps that intersect the range of a given species.",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_intersect_species"
]
},
{
"page": "BIEN_ranges_list",
"title": "List available range maps",
"concept": [
"metadata functions",
"range functions"
],
"topics": [
"BIEN_ranges_list"
]
},
{
"page": "BIEN_ranges_load_species",
"title": "Load range maps for specified species.",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_load_species"
]
},
{
"page": "BIEN_ranges_sf",
"title": "Download range maps that intersect a user-supplied sf object.",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_sf"
]
},
{
"page": "BIEN_ranges_shapefile_to_skinny",
"title": "Extract range data and convert to smaller \"skinny\" format",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_shapefile_to_skinny"
]
},
{
"page": "BIEN_ranges_skinny_ranges_to_richness_raster",
"title": "Build a richness raster from a skinny range file",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_skinny_ranges_to_richness_raster"
]
},
{
"page": "BIEN_ranges_species",
"title": "Download range maps for given species.",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_species"
]
},
{
"page": "BIEN_ranges_species_bulk",
"title": "Extract range data for large numbers of species",
"concept": [
"range functions"
],
"topics": [
"BIEN_ranges_species_bulk"
]
},
{
"page": "BIEN_stem_datasource",
"title": "Extract stem data for a given datasource from BIEN",
"concept": [
"stem functions"
],
"topics": [
"BIEN_stem_datasource"
]
},
{
"page": "BIEN_stem_family",
"title": "Extract stem data for specified families from BIEN",
"concept": [
"stem functions"
],
"topics": [
"BIEN_stem_family"
]
},
{
"page": "BIEN_stem_genus",
"title": "Extract stem data for specified genera from BIEN",
"concept": [
"stem functions"
],
"topics": [
"BIEN_stem_genus"
]
},
{
"page": "BIEN_stem_sampling_protocol",
"title": "Download stem data using a specified sampling protocol.",
"concept": [
"stem functions"
],
"topics": [
"BIEN_stem_sampling_protocol"
]
},
{
"page": "BIEN_stem_species",
"title": "Extract stem data for specified species from BIEN",
"concept": [
"stem functions"
],
"topics": [
"BIEN_stem_species"
]
},
{
"page": "BIEN_taxonomy_family",
"title": "Extract taxonomic information for families",
"concept": [
"taxonomy functions"
],
"topics": [
"BIEN_taxonomy_family"
]
},
{
"page": "BIEN_taxonomy_genus",
"title": "Extract taxonomic information for genera",
"concept": [
"taxonomy functions"
],
"topics": [
"BIEN_taxonomy_genus"
]
},
{
"page": "BIEN_taxonomy_species",
"title": "Extract taxonomic information for species",
"concept": [
"taxonomy functions"
],
"topics": [
"BIEN_taxonomy_species"
]
},
{
"page": "BIEN_trait_country",
"title": "Download trait data for given country.",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_country"
]
},
{
"page": "BIEN_trait_family",
"title": "Download trait data for given families.",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_family"
]
},
{
"page": "BIEN_trait_genus",
"title": "Download trait data for given genera.",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_genus"
]
},
{
"page": "BIEN_trait_list",
"title": "List all available types of trait data",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_list"
]
},
{
"page": "BIEN_trait_mean",
"title": "Calculates species mean values for a given trait, using Genus or Family level data where Species level data is lacking.",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_mean"
]
},
{
"page": "BIEN_trait_species",
"title": "Download trait data for given species.",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_species"
]
},
{
"page": "BIEN_trait_trait",
"title": "Download all measurements of a specific trait(s).",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_trait"
]
},
{
"page": "BIEN_trait_traitbyfamily",
"title": "Download trait data for given families and traits.",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_traitbyfamily"
]
},
{
"page": "BIEN_trait_traitbygenus",
"title": "Download trait data for given genus/genera and trait(s).",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_traitbygenus"
]
},
{
"page": "BIEN_trait_traitbyspecies",
"title": "Download trait data for given species and trait.",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_traitbyspecies"
]
},
{
"page": "BIEN_trait_traits_per_species",
"title": "Count the number of trait observations for each species in the BIEN database",
"concept": [
"trait functions"
],
"topics": [
"BIEN_trait_traits_per_species"
]
}
],
"_readme": "https://github.com/cran/BIEN/raw/HEAD/README.md",
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"title": "BIEN R package",
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"headings": [
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"Data Usage: Warnings and Caveats",
"Database connection issues",
"Function Names",
"Function Directory",
"BIEN_metadata functions",
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