{
  "_id": "6a2a66427b7a29ca6004108f",
  "Package": "BIEN",
  "Title": "Tools for Accessing the Botanical Information and Ecology\nNetwork Database",
  "Version": "1.2.8",
  "Authors@R": "person(\"Brian\", \"Maitner\", email = \"bmaitner@gmail.com\", role = c(\"aut\", \"cre\"))",
  "Description": "Provides Tools for Accessing the Botanical Information and\nEcology Network Database.  The BIEN database contains cleaned\nand standardized botanical data including occurrence, trait,\nplot and taxonomic data (See\n<https://bien.nceas.ucsb.edu/bien/> for more Information). This\npackage provides functions that query the BIEN database by\nconstructing and executing optimized SQL queries.",
  "License": "MIT + file LICENSE",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-11 07:35:31 UTC",
    "User": "root"
  },
  "Author": "Brian Maitner [aut, cre]",
  "Maintainer": "Brian Maitner <bmaitner@gmail.com>",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibssl-dev libproj-dev libsqlite3-dev libudunits2-dev",
  "Repository": "https://bmaitner.r-universe.dev",
  "Date/Publication": "2026-04-30 09:31:26 UTC",
  "RemoteUrl": "https://github.com/cran/BIEN",
  "RemoteRef": "HEAD",
  "RemoteSha": "2cffd4a2b529137324a432026facc959cf1efd17",
  "MD5sum": "1e154c47e81bb21b310609e5c7bc4af5",
  "_user": "bmaitner",
  "_type": "src",
  "_file": "BIEN_1.2.8.tar.gz",
  "_fileid": "c212214a0e688accc5daa6bd31b7d08eff54a9174ee2c0199bb78699d413e84f",
  "_filesize": 352676,
  "_sha256": "c212214a0e688accc5daa6bd31b7d08eff54a9174ee2c0199bb78699d413e84f",
  "_created": "2026-06-11T07:35:31.000Z",
  "_published": "2026-06-11T07:39:46.160Z",
  "_distro": "noble",
  "_jobs": [
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  "_buildurl": "https://github.com/r-universe/bmaitner/actions/runs/27328928738",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/BIEN",
  "_commit": {
    "id": "2cffd4a2b529137324a432026facc959cf1efd17",
    "author": "Brian Maitner <bmaitner@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.2.8\n",
    "time": 1777541486
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  "_maintainer": {
    "name": "Brian Maitner",
    "email": "bmaitner@gmail.com",
    "login": "bmaitner",
    "description": "",
    "uuid": 11130881
  },
  "_registered": true,
  "_dependencies": [
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      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "RPostgreSQL",
      "role": "Depends"
    },
    {
      "package": "DBI",
      "role": "Imports"
    },
    {
      "package": "ape",
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    },
    {
      "package": "sf",
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    {
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    },
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      "package": "knitr",
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    },
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    },
    {
      "package": "curl",
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    },
    {
      "package": "maps",
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  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 5,
  "_updates": [
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [
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      "name": "1.2.8",
      "date": "2026-04-30"
    }
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  "_stars": 0,
  "_contributors": [
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  "_userbio": {
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    "name": "Brian Maitner"
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  "_downloads": {
    "count": 6726,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BIEN"
  },
  "_searchresults": 247,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BIEN.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bmaitner",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-01-12"
    },
    {
      "version": "1.1.0",
      "date": "2017-03-08"
    },
    {
      "version": "1.2.1",
      "date": "2017-07-31"
    },
    {
      "version": "1.2.2",
      "date": "2017-08-03"
    },
    {
      "version": "1.2.3",
      "date": "2018-05-09"
    },
    {
      "version": "1.2.4",
      "date": "2020-02-27"
    },
    {
      "version": "1.2.5",
      "date": "2022-02-25"
    },
    {
      "version": "1.2.6",
      "date": "2023-01-06"
    },
    {
      "version": "1.2.7",
      "date": "2025-01-31"
    },
    {
      "version": "1.2.8",
      "date": "2026-04-30"
    }
  ],
  "_exports": [
    "BIEN_list_all",
    "BIEN_list_country",
    "BIEN_list_county",
    "BIEN_list_sf",
    "BIEN_list_state",
    "BIEN_metadata_citation",
    "BIEN_metadata_database_version",
    "BIEN_metadata_list_political_names",
    "BIEN_metadata_match_data",
    "BIEN_occurrence_box",
    "BIEN_occurrence_country",
    "BIEN_occurrence_county",
    "BIEN_occurrence_family",
    "BIEN_occurrence_genus",
    "BIEN_occurrence_records_per_species",
    "BIEN_occurrence_sf",
    "BIEN_occurrence_species",
    "BIEN_occurrence_state",
    "BIEN_phylogeny_complete",
    "BIEN_phylogeny_conservative",
    "BIEN_phylogeny_label_nodes",
    "BIEN_plot_country",
    "BIEN_plot_dataset",
    "BIEN_plot_datasource",
    "BIEN_plot_list_datasource",
    "BIEN_plot_list_sampling_protocols",
    "BIEN_plot_metadata",
    "BIEN_plot_name",
    "BIEN_plot_sampling_protocol",
    "BIEN_plot_sf",
    "BIEN_plot_state",
    "BIEN_ranges_box",
    "BIEN_ranges_genus",
    "BIEN_ranges_intersect_species",
    "BIEN_ranges_list",
    "BIEN_ranges_load_species",
    "BIEN_ranges_sf",
    "BIEN_ranges_shapefile_to_skinny",
    "BIEN_ranges_skinny_ranges_to_richness_raster",
    "BIEN_ranges_species",
    "BIEN_ranges_species_bulk",
    "BIEN_stem_datasource",
    "BIEN_stem_family",
    "BIEN_stem_genus",
    "BIEN_stem_sampling_protocol",
    "BIEN_stem_species",
    "BIEN_taxonomy_family",
    "BIEN_taxonomy_genus",
    "BIEN_taxonomy_species",
    "BIEN_trait_country",
    "BIEN_trait_family",
    "BIEN_trait_genus",
    "BIEN_trait_list",
    "BIEN_trait_mean",
    "BIEN_trait_species",
    "BIEN_trait_trait",
    "BIEN_trait_traitbyfamily",
    "BIEN_trait_traitbygenus",
    "BIEN_trait_traitbyspecies",
    "BIEN_trait_traits_per_species"
  ],
  "_help": [
    {
      "page": "BIEN",
      "title": "BIEN: Tools for accessing the BIEN database.",
      "topics": [
        "BIEN-package",
        "BIEN"
      ]
    },
    {
      "page": "BIEN_list_all",
      "title": "Extract a list of all species in the BIEN database.",
      "concept": [
        "list functions"
      ],
      "topics": [
        "BIEN_list_all"
      ]
    },
    {
      "page": "BIEN_list_country",
      "title": "Extract species list by country",
      "concept": [
        "list functions"
      ],
      "topics": [
        "BIEN_list_country"
      ]
    },
    {
      "page": "BIEN_list_county",
      "title": "Extract a species list by county.",
      "concept": [
        "list functions"
      ],
      "topics": [
        "BIEN_list_county"
      ]
    },
    {
      "page": "BIEN_list_sf",
      "title": "Extract a list of species within a given sf polygon.",
      "concept": [
        "list functions"
      ],
      "topics": [
        "BIEN_list_sf"
      ]
    },
    {
      "page": "BIEN_list_state",
      "title": "Extract a species list by state/province",
      "concept": [
        "list functions"
      ],
      "topics": [
        "BIEN_list_state"
      ]
    },
    {
      "page": "BIEN_metadata_citation",
      "title": "Generate citations for data extracted from BIEN.",
      "concept": [
        "metadata functions"
      ],
      "topics": [
        "BIEN_metadata_citation"
      ]
    },
    {
      "page": "BIEN_metadata_database_version",
      "title": "Download the current BIEN database version and release date",
      "concept": [
        "metadata functions"
      ],
      "topics": [
        "BIEN_metadata_database_version"
      ]
    },
    {
      "page": "BIEN_metadata_list_political_names",
      "title": "List political divisions and associated geonames codes.",
      "concept": [
        "metadata functions"
      ],
      "topics": [
        "BIEN_metadata_list_political_names"
      ]
    },
    {
      "page": "BIEN_metadata_match_data",
      "title": "Check for differing records between old and new dataframes.",
      "concept": [
        "metadata functions"
      ],
      "topics": [
        "BIEN_metadata_match_data"
      ]
    },
    {
      "page": "BIEN_occurrence_box",
      "title": "Extract species occurrence records by a latitude/longitude bounding box.",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_box"
      ]
    },
    {
      "page": "BIEN_occurrence_country",
      "title": "Extract species occurrence records by country.",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_country"
      ]
    },
    {
      "page": "BIEN_occurrence_county",
      "title": "Extract species occurrence records by county.",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_county"
      ]
    },
    {
      "page": "BIEN_occurrence_family",
      "title": "Extract species occurrences by family.",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_family"
      ]
    },
    {
      "page": "BIEN_occurrence_genus",
      "title": "Extract occurrence data from BIEN for specified genera",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_genus"
      ]
    },
    {
      "page": "BIEN_occurrence_records_per_species",
      "title": "Count the number of (geoValid) occurrence records for each species in BIEN",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_records_per_species"
      ]
    },
    {
      "page": "BIEN_occurrence_sf",
      "title": "Extract occurrence data for specified sf polygon",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_sf"
      ]
    },
    {
      "page": "BIEN_occurrence_species",
      "title": "Extract occurrence data for specified species from BIEN",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_species"
      ]
    },
    {
      "page": "BIEN_occurrence_state",
      "title": "Extract species occurrence records by state.",
      "concept": [
        "occurrence functions"
      ],
      "topics": [
        "BIEN_occurrence_state"
      ]
    },
    {
      "page": "BIEN_phylogeny_complete",
      "title": "Download the complete BIEN phylogenies",
      "concept": [
        "phylogeny functions"
      ],
      "topics": [
        "BIEN_phylogeny_complete"
      ]
    },
    {
      "page": "BIEN_phylogeny_conservative",
      "title": "Download the conservative BIEN phylogeny",
      "concept": [
        "phylogeny functions"
      ],
      "topics": [
        "BIEN_phylogeny_conservative"
      ]
    },
    {
      "page": "BIEN_phylogeny_label_nodes",
      "title": "Label nodes on a phylogeny",
      "concept": [
        "phylogeny functions"
      ],
      "topics": [
        "BIEN_phylogeny_label_nodes"
      ]
    },
    {
      "page": "BIEN_plot_country",
      "title": "Download plot data from specified countries.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_country"
      ]
    },
    {
      "page": "BIEN_plot_dataset",
      "title": "Download plot data by dataset.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_dataset"
      ]
    },
    {
      "page": "BIEN_plot_datasource",
      "title": "Download plot data from a given datasource.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_datasource"
      ]
    },
    {
      "page": "BIEN_plot_list_datasource",
      "title": "List available datasources.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_list_datasource"
      ]
    },
    {
      "page": "BIEN_plot_list_sampling_protocols",
      "title": "List available sampling protocols.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_list_sampling_protocols"
      ]
    },
    {
      "page": "BIEN_plot_metadata",
      "title": "Download plot metadata",
      "concept": [
        "metadata functions",
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_metadata"
      ]
    },
    {
      "page": "BIEN_plot_name",
      "title": "Download plot data by plot name.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_name"
      ]
    },
    {
      "page": "BIEN_plot_sampling_protocol",
      "title": "Download plot data using a specified sampling protocol.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_sampling_protocol"
      ]
    },
    {
      "page": "BIEN_plot_sf",
      "title": "Download plot data from specified sf object.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_sf"
      ]
    },
    {
      "page": "BIEN_plot_state",
      "title": "Download plot data from specified states/provinces.",
      "concept": [
        "plot functions"
      ],
      "topics": [
        "BIEN_plot_state"
      ]
    },
    {
      "page": "BIEN_ranges_box",
      "title": "Download range maps that intersect a specified bounding box.",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_box"
      ]
    },
    {
      "page": "BIEN_ranges_genus",
      "title": "Download range maps for given genus.",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_genus"
      ]
    },
    {
      "page": "BIEN_ranges_intersect_species",
      "title": "Download range maps that intersect the range of a given species.",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_intersect_species"
      ]
    },
    {
      "page": "BIEN_ranges_list",
      "title": "List available range maps",
      "concept": [
        "metadata functions",
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_list"
      ]
    },
    {
      "page": "BIEN_ranges_load_species",
      "title": "Load range maps for specified species.",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_load_species"
      ]
    },
    {
      "page": "BIEN_ranges_sf",
      "title": "Download range maps that intersect a user-supplied sf object.",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_sf"
      ]
    },
    {
      "page": "BIEN_ranges_shapefile_to_skinny",
      "title": "Extract range data and convert to smaller \"skinny\" format",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_shapefile_to_skinny"
      ]
    },
    {
      "page": "BIEN_ranges_skinny_ranges_to_richness_raster",
      "title": "Build a richness raster from a skinny range file",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_skinny_ranges_to_richness_raster"
      ]
    },
    {
      "page": "BIEN_ranges_species",
      "title": "Download range maps for given species.",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_species"
      ]
    },
    {
      "page": "BIEN_ranges_species_bulk",
      "title": "Extract range data for large numbers of species",
      "concept": [
        "range functions"
      ],
      "topics": [
        "BIEN_ranges_species_bulk"
      ]
    },
    {
      "page": "BIEN_stem_datasource",
      "title": "Extract stem data for a given datasource from BIEN",
      "concept": [
        "stem functions"
      ],
      "topics": [
        "BIEN_stem_datasource"
      ]
    },
    {
      "page": "BIEN_stem_family",
      "title": "Extract stem data for specified families from BIEN",
      "concept": [
        "stem functions"
      ],
      "topics": [
        "BIEN_stem_family"
      ]
    },
    {
      "page": "BIEN_stem_genus",
      "title": "Extract stem data for specified genera from BIEN",
      "concept": [
        "stem functions"
      ],
      "topics": [
        "BIEN_stem_genus"
      ]
    },
    {
      "page": "BIEN_stem_sampling_protocol",
      "title": "Download stem data using a specified sampling protocol.",
      "concept": [
        "stem functions"
      ],
      "topics": [
        "BIEN_stem_sampling_protocol"
      ]
    },
    {
      "page": "BIEN_stem_species",
      "title": "Extract stem data for specified species from BIEN",
      "concept": [
        "stem functions"
      ],
      "topics": [
        "BIEN_stem_species"
      ]
    },
    {
      "page": "BIEN_taxonomy_family",
      "title": "Extract taxonomic information for families",
      "concept": [
        "taxonomy functions"
      ],
      "topics": [
        "BIEN_taxonomy_family"
      ]
    },
    {
      "page": "BIEN_taxonomy_genus",
      "title": "Extract taxonomic information for genera",
      "concept": [
        "taxonomy functions"
      ],
      "topics": [
        "BIEN_taxonomy_genus"
      ]
    },
    {
      "page": "BIEN_taxonomy_species",
      "title": "Extract taxonomic information for species",
      "concept": [
        "taxonomy functions"
      ],
      "topics": [
        "BIEN_taxonomy_species"
      ]
    },
    {
      "page": "BIEN_trait_country",
      "title": "Download trait data for given country.",
      "concept": [
        "trait functions"
      ],
      "topics": [
        "BIEN_trait_country"
      ]
    },
    {
      "page": "BIEN_trait_family",
      "title": "Download trait data for given families.",
      "concept": [
        "trait functions"
      ],
      "topics": [
        "BIEN_trait_family"
      ]
    },
    {
      "page": "BIEN_trait_genus",
      "title": "Download trait data for given genera.",
      "concept": [
        "trait functions"
      ],
      "topics": [
        "BIEN_trait_genus"
      ]
    },
    {
      "page": "BIEN_trait_list",
      "title": "List all available types of trait data",
      "concept": [
        "trait functions"
      ],
      "topics": [
        "BIEN_trait_list"
      ]
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      "page": "BIEN_trait_mean",
      "title": "Calculates species mean values for a given trait, using Genus or Family level data where Species level data is lacking.",
      "concept": [
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      "topics": [
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      "page": "BIEN_trait_species",
      "title": "Download trait data for given species.",
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      "title": "BIEN R package",
      "author": "Brian Maitner",
      "engine": "knitr::rmarkdown",
      "headings": [
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        "Database connection issues",
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      "headings": [
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        "Trait data",
        "Taxonomy Data",
        "Phylogenies",
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      "created": "2017-07-31 04:34:28",
      "modified": "2026-04-30 09:31:26",
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